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MolNFT v1 · #128074 · protein

Glucocorticoid receptor in complex with budesonide

5NFP: “Glucocorticoid receptor in complex with budesonide”. X-ray diffraction, 2 ligands (CPS, 8W5). MolNFT v1 #128074 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
5NFP
Type
protein
Length
260 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P04150, Q15596
Ligands
CPS, 8W5

Structure

x-ray diffraction · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein247—P04150
B—protein13—Q15596

Ligands and binding sites

  • CPS · 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonate · ligand · chains A
  • 8W5 · (1~{S},2~{S},4~{R},6~{R},8~{S},9~{S},11~{S},12~{S}, 13~{R})-9,13-dimethyl-11-oxidanyl-8-(2-oxidanylethanoyl)-6-propyl-5,7-dioxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13, 18}]icosa-14,17-dien-16-one · ligand · chains A
  • EDO · 1,2-ethanediol · additive · chains A
  • GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5NFP · Glucocorticoid Receptor in complex with budesonide · the same entry in another collection · chain A against A, TM-score 1.00
  • P04150 · AlphaFold monomer V2.0 prediction for glucocorticoid receptor (P04150) · a predicted model of the same protein · chain A against A, TM-score 0.98

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