GL1X · GenesisL1 explorer

MolNFT v1 · #127906 · protein

Enah EVH1 in complex with ac-[2-cl-F]-[prom-1]-[prom-1]-oh

5NAJ: “Enah EVH1 in complex with ac-[2-cl-F]-[prom-1]-[prom-1]-oh”. X-ray diffraction, 4 ligands (8SE, 8SB, SO4). MolNFT v1 #127906 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
5NAJ
Type
protein
Length
440 residues
Chains
4
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q8N8S7
Ligands
8SE, 8SB, SO4, CL

Structure

x-ray diffraction · 3 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, D—protein110—Q8N8S7
B—protein109—Q8N8S7
C—protein111—Q8N8S7

Ligands and binding sites

  • 8SE · (3~{S},7~{R},10~{R},13~{S})-4-[[(3~{S},7~{R},10~{R}, 13~{S})-4-[(2~{S})-2-acetamido-3-(2-chlorophenyl) propanoyl]-2-oxidanylidene-1,4-diazatricyclo[8.3.0.0^{3,7}]tridec-8-en-13-yl]carbonyl]-2-oxidanylidene-1,4-diazatricyclo[8.3.0.0^{3,7}]tridec-8-ene-13-carboxylic acid · ligand · 4 copies · chains A, B, D, C
  • 8SB · (3~{S},7~{R},10~{R},13~{S})-4-[[(3~{R},7~{S},10~{S}, 13~{R})-4-[(2~{S})-2-acetamido-3-(2-chlorophenyl) propanoyl]-2-oxidanylidene-1,4-diazatricyclo[8.3.0.0^{3,7}]tridec-8-en-13-yl]carbonyl]-2-oxidanylidene-1,4-diazatricyclo[8.3.0.0^{3,7}]tridec-8-ene-13-carboxylic acid · ligand · chains A, B, C
  • SO4 · Sulfate ion · ion · 9 copies · chains A, B, C, D
  • CL · Chloride ion · ion · chains C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5NAJ · ENAH EVH1 in complex with Ac-[2-Cl-F]-[ProM-1]-[ProM-1]-OH · the same entry in another collection · chain D against D, TM-score 1.00
  • Q8N8S7 · AlphaFold monomer V2.0 prediction for protein enabled homolog (Q8N8S7) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.