MolNFT v1 · #127573 · protein

HPAD4 crystal complex with bb-F-amidine

5N0M: “HPAD4 crystal complex with bb-F-amidine”. X-ray diffraction, 3 ligands (8HT, CA, SO4). MolNFT v1 #127573 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5N0M
Type: protein
Length: 636 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q9UM07
Ligands: 8HT, CA, SO4

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	636	—	Q9UM07

Ligands and binding sites

8HT · ~{N}-[(1~{S})-1-(1~{H}-benzimidazol-2-yl)-4-(2-fluoranylethanimidoylamino)butyl]-4-phenyl-benzamide · ligand · chains A
CA · Calcium ion · metal · 5 copies · chains A
SO4 · Sulfate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5N0M · hPAD4 crystal complex with BB-F-amidine · the same entry in another collection · chain A against A, TM-score 1.00
Q9UM07 · AlphaFold monomer V2.0 prediction for protein-arginine deiminase type-4 (Q9UM07) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9UM07
Elsewhere: RCSB PDB 5N0M · PDBe 5N0M · UniProt Q9UM07

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