MolNFT v1 · #285788 · protein
AlphaFold monomer V2.0 prediction for protein-arginine deiminase type-4 (Q9UM07)
Q9UM07: “AlphaFold monomer V2.0 prediction for protein-arginine deiminase type-4 (Q9UM07)”. 3 pockets (best druggability 0.50). MolNFT v1 #285788 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q9UM07
- Type
- protein
- Length
- 663 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd10960F956646DE8b64d3598984c91C2d5Af3D7b
- Molecule
- Protein-arginine deiminase type-4
- UniProt
- Q9UM07
- Pockets
- 3 · best druggability 0.50
Structure
1 distinct chain · 19% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein-arginine deiminase type-4 | protein | 663 | 19% helix, 36% strand | Q9UM07 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 197 | 0.50 | 0.77 | 25 | empty |
| 2 | 86 | 0.38 | 0.77 | 15 | empty |
| 3 | 78 | 0.34 | 0.75 | 19 | empty |
Compared structures
- 5N0Z · HPAD4 crystal complex with afm-41A · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 5N0M · hPAD4 crystal complex with BB-F-amidine · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 5N0M · HPAD4 crystal complex with bb-F-amidine · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 5N0Y · HPAD4 crystal complex with afm-30A · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 4DKT · Crystal structure of human peptidylarginine deiminase 4 in complex with… · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 4DKT · Crystal structure of human peptidylarginine deiminase 4 in complex with… · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 2DEW · Crystal structure of human peptidylarginine deiminase 4 in complex with histone H3… · an experimental structure of the same protein · chain A against X, TM-score 0.94
- 2DEW · Crystal structure of human peptidylarginine deiminase 4 in complex with histone H3… · an experimental structure of the same protein · chain A against X, TM-score 0.94
- 3B1U · Crystal structure of human peptidylarginine deiminase 4 in complex with O-F-amidine · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 3B1U · Crystal structure of human peptidylarginine deiminase 4 in complex with o-F-amidine · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 1WDA · Crystal structure of human peptidylarginine deiminase TYPE4 (PAD4) in complex with… · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 1WDA · Crystal structure of human peptidylarginine deiminase type4 (PAD4) in complex with… · an experimental structure of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UM07
- Elsewhere: UniProt Q9UM07 · AlphaFold DB Q9UM07
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