MolNFT v1 · #127563 · protein

Crystal structure of the tetanus neurotoxin in complex with GM1A

5N0C: “Crystal structure of the tetanus neurotoxin in complex with GM1A”. X-ray diffraction, 5 ligands (GAL, BGC, NGA). MolNFT v1 #127563 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5N0C
Type: protein
Length: 2,579 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P04958
Ligands: GAL, BGC, NGA, SIA, ZN

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	1293	—	P04958
B	—	protein	1286	—	P04958

Ligands and binding sites

GAL · beta-D-galactopyranose · sugar · 4 copies · chains A, B
BGC · beta-D-glucopyranose · sugar · 2 copies
NGA · 2-acetamido-2-deoxy-beta-D-galactopyranose · sugar · 2 copies · chains A, B
SIA · N-acetyl-alpha-neuraminic acid · sugar · 2 copies · chains A, B
ZN · Zinc ion · metal · 2 copies · chains A, B
PEG · Di(hydroxyethyl)ether · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5N0C · Crystal structure of the tetanus neurotoxin in complex with GM1a · the same entry in another collection · chain A against A, TM-score 1.00
P04958 · AlphaFold monomer V2.0 prediction for tetanus toxin (P04958) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04958
Elsewhere: RCSB PDB 5N0C · PDBe 5N0C · UniProt P04958

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