MolNFT v1 · #127002 · protein
S. pombe microtubule copolymerized with GTP and MAL3-143
5MJS: “S. pombe microtubule copolymerized with GTP and MAL3-143”. Electron microscopy, 2 ligands (GDP, GTP). MolNFT v1 #127002 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5MJS
- Type
- protein
- Length
- 3,569 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P05219, Q10113, P04688
- Ligands
- GDP, GTP
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, J, B, C | — | protein | 428 | — | P05219 |
| D | — | protein | 121 | — | Q10113 |
| E, F, G, H | — | protein | 434 | — | P04688 |
Ligands and binding sites
- GDP · Guanosine-5'-diphosphate · ligand · 4 copies · chains A, F, E, J, B, C
- GTP · Guanosine-5'-triphosphate · ligand · 4 copies · chains E, B, F, C, G, J, A, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5MJS · S. pombe microtubule copolymerized with GTP and Mal3-143 · the same entry in another collection · chain C against C, TM-score 1.00
- P04688 · AlphaFold monomer V2.0 prediction for tubulin alpha-1 chain (P04688) · a predicted model of the same protein · chain E against A, TM-score 0.97
- P05219 · AlphaFold monomer V2.0 prediction for tubulin beta chain (P05219) · a predicted model of the same protein · chain A against A, TM-score 0.97
- Q10113 · AlphaFold monomer V2.0 prediction for microtubule integrity protein MAL3 (Q10113) · a predicted model of the same protein · chain D against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P05219
- Every structure of UniProt Q10113
- Every structure of UniProt P04688
- Elsewhere: RCSB PDB 5MJS · PDBe 5MJS · UniProt P05219 · UniProt Q10113 · UniProt P04688
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