MolNFT v1 · #126980 · protein
Interleukin-23 complex with an antagonistic alphabody, crystal form 1
5MJ3: “Interleukin-23 complex with an antagonistic alphabody, crystal form 1”. X-ray diffraction, 4 ligands (NAG, MAN, BMA). MolNFT v1 #126980 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5MJ3
- Type
- protein
- Length
- 544 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P29460, Q9NPF7
- Ligands
- NAG, MAN, BMA, NA
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 302 | — | P29460 |
| B | — | protein | 155 | — | Q9NPF7 |
| C | — | protein | 87 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
- MAN · alpha-D-mannopyranose · sugar · 2 copies
- BMA · beta-D-mannopyranose · sugar
- NA · Sodium ion · metal · 2 copies · chains A
- PGE · Triethylene glycol · additive · 2 copies · chains A
- PG4 · Tetraethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5MJ3 · Interleukin-23 complex with an antagonistic alphabody, crystal form 1 · the same entry in another collection · chain A against A, TM-score 1.00
- P29460 · AlphaFold monomer V2.0 prediction for interleukin-12 subunit beta (P29460) · a predicted model of the same protein · chain A against A, TM-score 0.99
- Q9NPF7 · AlphaFold monomer V2.0 prediction for interleukin-23 subunit alpha (Q9NPF7) · a predicted model of the same protein · chain B against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P29460
- Every structure of UniProt Q9NPF7
- Elsewhere: RCSB PDB 5MJ3 · PDBe 5MJ3 · UniProt P29460 · UniProt Q9NPF7
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