MolNFT v1 · #126535 · protein
Clathrin heavy chain N-terminal domain bound to a non-natural clathrin-box motif peptide (AMPH4T1)
5M5T: “Clathrin heavy chain N-terminal domain bound to a non-natural clathrin-box motif peptide (AMPH4T1)”. X-ray diffraction. MolNFT v1 #126535 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5M5T
- Type
- protein
- Length
- 763 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P49951, O08838
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 360 | — | P49951 |
| E, F, J | — | protein | 7 | — | O08838 |
| G, H | — | protein | 8 | — | O08838 |
| I | — | protein | 6 | — | O08838 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5M5T · Clathrin heavy chain N-terminal domain bound to a non-natural clathrin-box motif peptide… · the same entry in another collection · chain J against J, TM-score 1.00
- P49951 · AlphaFold monomer V2.0 prediction for clathrin heavy chain 1 (P49951) · a predicted model of the same protein · chain A against A, TM-score 0.99
- O08838 · AlphaFold monomer V2.0 prediction for amphiphysin (O08838) · a predicted model of the same protein · chain J against A, TM-score 0.57
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P49951
- Every structure of UniProt O08838
- Elsewhere: RCSB PDB 5M5T · PDBe 5M5T · UniProt P49951 · UniProt O08838
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