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MolNFT v1 · #126087 · protein

Photosynthetic reaction center mutant with glu L212 replaced with ala (chain L, EL212W), asp L213 replaced with ala (chain L, DL213A) and leu M215 replaced with ala (chain M, LM215A)

5LSE: “Photosynthetic reaction center mutant with glu L212 replaced with ala (chain L, EL212W), asp L213 replaced…”. X-ray diffraction, 8 ligands (D12, BCL, BPH). MolNFT v1 #126087 on GenesisL1: 3D structure, binding sites and pockets in…

PDB
5LSE
Type
protein
Length
821 residues
Chains
3
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P0C0Y8, P0C0Y9, P0C0Y7
Ligands
D12, BCL, BPH, U10, SPN, CDL, FE, PO4

Structure

x-ray diffraction · 3 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
L—protein281—P0C0Y8
M—protein300—P0C0Y9
H—protein240—P0C0Y7

Ligands and binding sites

  • D12 · Dodecane · ligand · 5 copies · chains L, H
  • BCL · Bacteriochlorophyll A · ligand · 4 copies · chains L, M
  • BPH · Bacteriopheophytin A · ligand · 2 copies · chains L, M
  • U10 · Ubiquinone-10 · ligand · 2 copies · chains L, M
  • SPN · Speroidenone · ligand · chains M
  • CDL · Cardiolipin · ligand · chains L, M, H
  • FE · Fe (III) ion · metal · chains L, M
  • PO4 · Phosphate ion · ion · chains M
  • LDA · Lauryl dimethylamine-N-oxide · additive · 3 copies · chains M, H, L

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5LSE · PHOTOSYNTHETIC REACTION CENTER MUTANT WITH Glu L212 replaced with Ala (CHAIN L, EL212W)… · the same entry in another collection · chain L against L, TM-score 1.00

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