MolNFT v1 · #126087 · protein
Photosynthetic reaction center mutant with glu L212 replaced with ala (chain L, EL212W), asp L213 replaced with ala (chain L, DL213A) and leu M215 replaced with ala (chain M, LM215A)
5LSE: “Photosynthetic reaction center mutant with glu L212 replaced with ala (chain L, EL212W), asp L213 replaced…”. X-ray diffraction, 8 ligands (D12, BCL, BPH). MolNFT v1 #126087 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5LSE
- Type
- protein
- Length
- 821 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0C0Y8, P0C0Y9, P0C0Y7
- Ligands
- D12, BCL, BPH, U10, SPN, CDL, FE, PO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L | — | protein | 281 | — | P0C0Y8 |
| M | — | protein | 300 | — | P0C0Y9 |
| H | — | protein | 240 | — | P0C0Y7 |
Ligands and binding sites
- D12 · Dodecane · ligand · 5 copies · chains L, H
- BCL · Bacteriochlorophyll A · ligand · 4 copies · chains L, M
- BPH · Bacteriopheophytin A · ligand · 2 copies · chains L, M
- U10 · Ubiquinone-10 · ligand · 2 copies · chains L, M
- SPN · Speroidenone · ligand · chains M
- CDL · Cardiolipin · ligand · chains L, M, H
- FE · Fe (III) ion · metal · chains L, M
- PO4 · Phosphate ion · ion · chains M
- LDA · Lauryl dimethylamine-N-oxide · additive · 3 copies · chains M, H, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5LSE · PHOTOSYNTHETIC REACTION CENTER MUTANT WITH Glu L212 replaced with Ala (CHAIN L, EL212W)… · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0C0Y8
- Every structure of UniProt P0C0Y9
- Every structure of UniProt P0C0Y7
- Elsewhere: RCSB PDB 5LSE · PDBe 5LSE · UniProt P0C0Y8 · UniProt P0C0Y9 · UniProt P0C0Y7
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