MolNFT v1 · #125856 · protein

Maedi-visna virus (mvv) integrase C-terminal domain (residues 220-276)

5LLJ: “Maedi-visna virus (mvv) integrase C-terminal domain (residues 220-276)”. X-ray diffraction, 1 ligand (CL). MolNFT v1 #125856 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5LLJ
Type: protein
Length: 114 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Integrase
EC: 3.4.23.-, 2.7.7.49, 3.1.26.13, 3.1.13.2, 3.6.1.23, 2.7.7.-, 3.1.-.-
UniProt: P35956
Ligands: CL

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 54% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Integrase (EC 3.4.23.-, 2.7.7.49, 3.1.26.13, 3.1.13.2, 3.6.1.23, 2.7.7.-, 3.1.-.-)	protein	57	5% helix, 54% strand	P35956

Ligands and binding sites

CL · Chloride ion · ion · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 428 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

5LLJ · Maedi-Visna virus (MVV) integrase C-terminal domain (residues 220-276) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P35956
Elsewhere: RCSB PDB 5LLJ · PDBe 5LLJ · UniProt P35956

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