Research workbench
Maedi-visna virus (mvv) integrase C-terminal domain (residues 220-276)
Analyse Maedi-visna virus (mvv) integrase C-terminal domain (residues 220-276) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5LLJ
- Type
- protein
- Length
- 114 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Integrase
- EC
- 3.4.23.-, 2.7.7.49, 3.1.26.13, 3.1.13.2, 3.6.1.23, 2.7.7.-, 3.1.-.-
- UniProt
- P35956
- Ligands
- CL
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Integrase (EC 3.4.23.-, 2.7.7.49, 3.1.26.13, 3.1.13.2, 3.6.1.23, 2.7.7.-, 3.1.-.-) | protein | 57 | 5% helix, 54% strand | P35956 |
Ligands and binding sites
- CL · Chloride ion · ion · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 428 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 5LLJ · Maedi-Visna virus (MVV) integrase C-terminal domain (residues 220-276) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P35956
- Elsewhere: RCSB PDB 5LLJ · PDBe 5LLJ · UniProt P35956
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