MolNFT v1 · #125752 · protein
Thermolysin in complex with inhibitor
5LIF: “Thermolysin in complex with inhibitor”. X-ray diffraction, 3 ligands (6XO, CA, ZN). MolNFT v1 #125752 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LIF
- Type
- protein
- Length
- 316 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P00800
- Ligands
- 6XO, CA, ZN
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| E | — | protein | 316 | — | P00800 |
Ligands and binding sites
- 6XO · (2~{S})-3-cyclohexyl-2-[[(2~{S})-4-methyl-2-[[oxidanyl(phenylmethoxycarbonylaminomethyl) phosphoryl]amino]pentanoyl]amino]propanoic acid · ligand · chains E
- CA · Calcium ion · metal · 4 copies · chains E
- ZN · Zinc ion · metal · chains E
- DMS · Dimethyl sulfoxide · additive · 3 copies · chains E
- GOL · Glycerol · additive · 2 copies · chains E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5LIF · Thermolysin in complex with inhibitor · the same entry in another collection · chain E against E, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00800
- Elsewhere: RCSB PDB 5LIF · PDBe 5LIF · UniProt P00800
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