MolNFT v1 · #125626 · protein
RAB6A:KIF20A complex
5LEF: “RAB6A:KIF20A complex”. X-ray diffraction, 3 ligands (GTP, MG, SO4). MolNFT v1 #125626 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LEF
- Type
- protein
- Length
- 421 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P20340, P97329
- Ligands
- GTP, MG, SO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 166 | — | P20340 |
| B | — | protein | 159 | — | P20340 |
| C | — | protein | 49 | — | P97329 |
| D | — | protein | 47 | — | P97329 |
Ligands and binding sites
- GTP · Guanosine-5'-triphosphate · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · 3 copies · chains A, B
- GOL · Glycerol · additive · chains A
- IPA · Isopropyl alcohol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5LEF · Rab6A:Kif20A complex · the same entry in another collection · chain D against D, TM-score 1.00
- P20340 · AlphaFold monomer V2.0 prediction for RAS-related protein rab-6A (P20340) · a predicted model of the same protein · chain B against A, TM-score 0.99
- P97329 · AlphaFold monomer V2.0 prediction for kinesin-like protein KIF20A (P97329) · a predicted model of the same protein · chain D against A, TM-score 0.86
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P20340
- Every structure of UniProt P97329
- Elsewhere: RCSB PDB 5LEF · PDBe 5LEF · UniProt P20340 · UniProt P97329
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