MolNFT v1 · #125260 · protein
Structure of the GTPase heterodimer of human SRP54 and sralpha
5L3Q: “Structure of the GTPase heterodimer of human SRP54 and sralpha”. X-ray diffraction, 4 ligands (GNP, AMP, MG). MolNFT v1 #125260 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5L3Q
- Type
- protein
- Length
- 1,144 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P61011, P08240
- Ligands
- GNP, AMP, MG, SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 265 | — | P61011 |
| B, D | — | protein | 307 | — | P08240 |
Ligands and binding sites
- GNP · Phosphoaminophosphonic acid-guanylate ester · ligand · 4 copies · chains A, B, C, D
- AMP · Adenosine monophosphate · ligand · 2 copies · chains A, B, C, D
- MG · Magnesium ion · metal · 4 copies · chains A, B, C, D
- SO4 · Sulfate ion · ion · 9 copies · chains A, B, C, D
- GOL · Glycerol · additive · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5L3Q · Structure of the GTPase heterodimer of human SRP54 and SRalpha · the same entry in another collection · chain A against A, TM-score 1.00
- P08240 · AlphaFold monomer V2.0 prediction for signal recognition particle receptor subunit alpha… · a predicted model of the same protein · chain B against A, TM-score 0.99
- P61011 · AlphaFold monomer V2.0 prediction for signal recognition particle 54 kda protein (P61011) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P61011
- Every structure of UniProt P08240
- Elsewhere: RCSB PDB 5L3Q · PDBe 5L3Q · UniProt P61011 · UniProt P08240
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