MolNFT v1 · #125232 · protein + DNA
Crystal structure of human primpol ternary complex
5L2X: “Crystal structure of human primpol ternary complex”. X-ray diffraction, 2 ligands (DTP, CA). MolNFT v1 #125232 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5L2X
- Type
- protein + DNA
- Length
- 556 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q96LW4
- Ligands
- DTP, CA
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 271 | — | Q96LW4 |
| C | — | dna | 12 | — | — |
| D, H | — | dna | 7 | — | — |
| B | — | protein | 251 | — | Q96LW4 |
| G | — | dna | 8 | — | — |
Ligands and binding sites
- DTP · 2'-deoxyadenosine 5'-triphosphate · ligand · 2 copies · chains A, C, D, B, G, H
- CA · Calcium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5L2X · Crystal structure of human PrimPol ternary complex · the same entry in another collection · chain H against H, TM-score 1.00
- Q96LW4 · AlphaFold monomer V2.0 prediction for DNA-directed PRIMASE/POLYMERASE protein (Q96LW4) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96LW4
- Elsewhere: RCSB PDB 5L2X · PDBe 5L2X · UniProt Q96LW4
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.