MolNFT v1 · #125201 · protein + RNA
Tar complex with HIV-1 tat-AFF4-P-tefb
5L1Z: “Tar complex with HIV-1 tat-AFF4-P-tefb”. X-ray diffraction, 2 ligands (ACE, ZN). MolNFT v1 #125201 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5L1Z
- Type
- protein + RNA
- Length
- 670 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P50750, O60563, Q9UHB7, P69697
- Ligands
- ACE, ZN
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 311 | — | P50750 |
| B | — | protein | 255 | — | O60563 |
| C | — | protein | 34 | — | Q9UHB7 |
| D | — | protein | 49 | — | P69697 |
| N | — | rna | 21 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5L1Z · TAR complex with HIV-1 Tat-AFF4-P-TEFb · the same entry in another collection · chain N against N, TM-score 1.00
- P50750 · AlphaFold monomer V2.0 prediction for cyclin-dependent kinase 9 (P50750) · a predicted model of the same protein · chain A against A, TM-score 0.99
- O60563 · AlphaFold monomer V2.0 prediction for cyclin-T1 (O60563) · a predicted model of the same protein · chain B against A, TM-score 0.96
- Q9UHB7 · AlphaFold monomer V2.0 prediction for AF4/FMR2 family member 4 (Q9UHB7) · a predicted model of the same protein · chain C against A, TM-score 0.51
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P50750
- Every structure of UniProt O60563
- Every structure of UniProt Q9UHB7
- Every structure of UniProt P69697
- Elsewhere: RCSB PDB 5L1Z · PDBe 5L1Z · UniProt P50750 · UniProt O60563 · UniProt Q9UHB7 · UniProt P69697
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