MolNFT v1 · #125162 · protein

Human POGLUT1 in complex with EGF(+) and udp

5L0T: “Human POGLUT1 in complex with EGF(+) and udp”. X-ray diffraction, 4 ligands (UDP, NAG, CA). MolNFT v1 #125162 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5L0T
Type: protein
Length: 396 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q8NBL1
Ligands: UDP, NAG, CA, CL

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	356	—	Q8NBL1
B	—	protein	40	—	—

Ligands and binding sites

UDP · Uridine-5'-diphosphate · ligand · chains A
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A
CA · Calcium ion · metal · 3 copies · chains A, B
CL · Chloride ion · ion · chains A, B
GOL · Glycerol · additive · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5L0T · human POGLUT1 in complex with EGF(+) and UDP · the same entry in another collection · chain A against A, TM-score 1.00
Q8NBL1 · AlphaFold monomer V2.0 prediction for protein O-glucosyltransferase 1 (Q8NBL1) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8NBL1
Elsewhere: RCSB PDB 5L0T · PDBe 5L0T · UniProt Q8NBL1

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