MolNFT v1 · #125032 · protein
Crystal structure of galactose binding protein from yersinia pestis in the complex with beta D glucose
5KWS · Galactose-binding protein: “Crystal structure of galactose binding protein from yersinia pestis in the complex with beta D glucose”. X-ray diffraction, 3 ligands (BGC, CA, NA). MolNFT v1 #125032 on GenesisL1: 3D structure, binding…
- PDB
- 5KWS
- Type
- protein
- Length
- 307 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Galactose-binding protein
- UniProt
- Q8D072
- Ligands
- BGC, CA, NA
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Galactose-binding protein | protein | 307 | 45% helix, 20% strand | Q8D072 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · chains A
- CA · Calcium ion · metal · chains A
- NA · Sodium ion · metal · chains A
- GOL · Glycerol · additive · 2 copies · chains A
- ACY · Acetic acid · additive · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KWS · Crystal Structure of Galactose Binding Protein from Yersinia pestis in the Complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8D072
- Elsewhere: RCSB PDB 5KWS · PDBe 5KWS · UniProt Q8D072
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.