MolNFT v1 · #124207 · protein

Crystal structure of rfviiifc

5K8D: “Crystal structure of rfviiifc”. X-ray diffraction, 5 ligands (NAG, MAN, BMA). MolNFT v1 #124207 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5K8D
Type: protein
Length: 1,230 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P00451, P01857
Ligands: NAG, MAN, BMA, CA, CU

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	611	—	P00451
B	—	protein	619	—	P00451, P01857

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains A, B
MAN · alpha-D-mannopyranose · sugar · 4 copies
BMA · beta-D-mannopyranose · sugar · 3 copies
CA · Calcium ion · metal · 3 copies · chains A
CU · Copper (II) ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5K8D · Crystal structure of rFVIIIFc · the same entry in another collection · chain A against A, TM-score 1.00
P00451 · AlphaFold monomer V2.0 prediction for coagulation factor VIII (P00451) · a predicted model of the same protein · chain B against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00451
Every structure of UniProt P01857
Elsewhere: RCSB PDB 5K8D · PDBe 5K8D · UniProt P00451 · UniProt P01857

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