MolNFT v1 · #124099 · protein

Wild-type pas-gaf fragment from deinococcus radiodurans bphp

5K5B: “Wild-type pas-gaf fragment from deinococcus radiodurans bphp”. X-ray diffraction, 1 ligand (LBV). MolNFT v1 #124099 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5K5B
Type: protein
Length: 305 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q9RZA4
Ligands: LBV

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	305	—	Q9RZA4

Ligands and binding sites

LBV · 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid · ligand · chains A
ACT · Acetate ion · additive · 3 copies · chains A
MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5K5B · Wild-type PAS-GAF fragment from Deinococcus radiodurans BphP · the same entry in another collection · chain A against A, TM-score 1.00
Q9RZA4 · AlphaFold monomer V2.0 prediction for bacteriophytochrome (Q9RZA4) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9RZA4
Elsewhere: RCSB PDB 5K5B · PDBe 5K5B · UniProt Q9RZA4

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