MolNFT v1 · #123070 · protein
Crystal structure of the catalytic domain of human protein tyrosine phosphatase non-receptor type 12 - K61R mutant
5J8R · Tyrosine-protein phosphatase non-receptor type 12: “Crystal structure of the catalytic domain of human protein tyrosine phosphatase non-receptor type 12 - K61R…”. X-ray diffraction, 18 pockets (best druggability 0.77). MolNFT v1…
- PDB
- 5J8R
- Type
- protein
- Length
- 1,159 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tyrosine-protein phosphatase non-receptor type 12
- EC
- 3.1.3.48
- UniProt
- Q05209
- Pockets
- 18 · best druggability 0.77
Structure
x-ray diffraction · 4 distinct chains · 36% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tyrosine-protein phosphatase non-receptor type 12 (EC 3.1.3.48) | protein | 296 | 38% helix, 22% strand | Q05209 |
| B | Tyrosine-protein phosphatase non-receptor type 12 (EC 3.1.3.48) | protein | 293 | 35% helix, 23% strand | Q05209 |
| C | Tyrosine-protein phosphatase non-receptor type 12 (EC 3.1.3.48) | protein | 286 | 37% helix, 18% strand | Q05209 |
| D | Tyrosine-protein phosphatase non-receptor type 12 (EC 3.1.3.48) | protein | 284 | 36% helix, 16% strand | Q05209 |
Pockets
18 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 725 | 0.77 | 0.82 | 63 | empty |
| 2 | 241 | 0.56 | 0.78 | 27 | empty |
| 3 | 159 | 0.54 | 0.80 | 25 | empty |
| 4 | 172 | 0.51 | 0.78 | 21 | empty |
| 5 | 103 | 0.48 | 0.80 | 23 | empty |
Interfaces
3 interfaces between chains.
- A–C · 501 Ų buried · 4 hydrogen bonds · protein-protein
- B–D · 486 Ų buried · 4 hydrogen bonds · protein-protein
- A–B · 399 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 5J8R · Crystal Structure of the Catalytic Domain of Human Protein Tyrosine Phosphatase… · the same entry in another collection · chain D against D, TM-score 1.00
- Q05209 · AlphaFold monomer V2.0 prediction for tyrosine-protein phosphatase non-receptor type 12… · a predicted model of the same protein · chain C against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q05209
- Elsewhere: RCSB PDB 5J8R · PDBe 5J8R · UniProt Q05209
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