MolNFT v1 · #122162 · protein

Macrolide 2'-phosphotransferase type II - complex with GDP and spiramycin

5IGZ · Macrolide 2'-phosphotransferase II: “Macrolide 2'-phosphotransferase type II - complex with GDP and spiramycin”. X-ray diffraction, 3 ligands (GDP, SPR, MG), 1 pocket (best druggability 0.80). MolNFT v1 #122162 on GenesisL1: 3D…

PDB: 5IGZ
Type: protein
Length: 299 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Macrolide 2'-phosphotransferase II
UniProt: O32553
Ligands: GDP, SPR, MG
Pockets: 1 · best druggability 0.80

Structure

x-ray diffraction · 1 distinct chain · 48% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Macrolide 2'-phosphotransferase II	protein	299	48% helix, 16% strand	O32553

Ligands and binding sites

GDP · Guanosine-5'-diphosphate · ligand · chains A
SPR · Spiramycin I · ligand · chains A
MG · Magnesium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	839	0.80	0.82	72	GDP, MG, SPR

Compared structures

5IGZ · Macrolide 2'-phosphotransferase type II - complex with GDP and spiramycin · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O32553
Elsewhere: RCSB PDB 5IGZ · PDBe 5IGZ · UniProt O32553

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