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Ligand · SPR

SPR · Spiramycin I

SPR, Spiramycin I (C43 H74 N2 O14, 843.0 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
SPR
Formula
C43 H74 N2 O14
Class
ligand
Structures
4
PDB entries
2

Binding sites

SPR in 4 structures; the first of them:

  • 1KD1 · Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula… · SPR A9001 · binds C839, G2099, A2100, G2102, A2103, A2538, G2540, G2646 and 1 more
  • 5IGZ · Macrolide 2'-phosphotransferase type II - complex with GDP and spiramycin · SPR A404 · binds LEU31, ASP32, ARG59, ILE103, HIS105, GLY108, ASN109, TYR110 and 16 more
  • 1KD1 · Co-crystal structure of spiramycin bound to the 50S ribosomal subunit of haloarcula… · SPR A9001 · binds C839, G2099, A2100, G2102, A2103, A2538, G2540, G2646 and 1 more
  • 5IGZ · Macrolide 2'-phosphotransferase type II - complex with GDP and spiramycin · SPR A404 · binds LEU31, ASP32, ARG59, ILE103, HIS105, GLY108, ASN109, TYR110 and 16 more

Residues it binds most

G 2, A 2, ARG 2, GLU 2, TYR 2, ASP 2, GLY 4, HIS 2, ILE 2, PHE 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • GDP · Guanosine-5'-diphosphate
  • CD · Cadmium ion
  • K · Potassium ion
  • NA · Sodium ion
  • CL · Chloride ion

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