MolNFT v1 · #122152 · protein

Macrolide 2'-phosphotransferase type I - complex with GDP and erythromycin

5IGP: “Macrolide 2'-phosphotransferase type I - complex with GDP and erythromycin”. X-ray diffraction, 2 ligands (GDP, ERY), 1 pocket (best druggability 0.75). MolNFT v1 #122152 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5IGP
Type: protein
Length: 300 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Macrolide 2'-phosphotransferase
UniProt: Q47396
Ligands: GDP, ERY
Pockets: 1 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 48% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Macrolide 2'-phosphotransferase	protein	300	48% helix, 17% strand	Q47396

Ligands and binding sites

GDP · Guanosine-5'-diphosphate · ligand · chains A
ERY · Erythromycin A · ligand · chains A
IPA · Isopropyl alcohol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	846	0.75	0.79	63	GDP, ERY

Compared structures

5IGP · Macrolide 2'-phosphotransferase type I - complex with GDP and erythromycin · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q47396
Elsewhere: RCSB PDB 5IGP · PDBe 5IGP · UniProt Q47396

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.