MolNFT v1 · #122149 · protein
Crystal structure of the bromodomain of human BRD9 in complex with bromosporine (bsp)
5IGM · Bromodomain-containing protein 9: “Crystal structure of the bromodomain of human BRD9 in complex with bromosporine (bsp)”. X-ray diffraction, 1 ligand (BMF), 3 pockets (best druggability 0.52). MolNFT v1 #122149 on GenesisL1: 3D…
- PDB
- 5IGM
- Type
- protein
- Length
- 225 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bromodomain-containing protein 9
- UniProt
- Q9H8M2
- Ligands
- BMF
- Pockets
- 3 · best druggability 0.52
Structure
x-ray diffraction · 2 distinct chains · 63% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Bromodomain-containing protein 9 | protein | 113 | 63% helix, 0% strand | Q9H8M2 |
| B | Bromodomain-containing protein 9 | protein | 112 | 63% helix, 0% strand | Q9H8M2 |
Ligands and binding sites
- BMF · Bromosporine · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 102 | 0.52 | 0.82 | 20 | BMF |
| 2 | 85 | 0.47 | 0.81 | 17 | BMF |
| 3 | 75 | 0.31 | 0.73 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 886 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 5IGM · Crystal structure of the bromodomain of human BRD9 in complex with bromosporine (BSP) · the same entry in another collection · chain A against A, TM-score 1.00
- Q9H8M2 · AlphaFold monomer V2.0 prediction for bromodomain-containing protein 9 (Q9H8M2) · a predicted model of the same protein · chain B against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9H8M2
- Elsewhere: RCSB PDB 5IGM · PDBe 5IGM · UniProt Q9H8M2
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