MolNFT v1 · #120871 · protein

The third PDZ domain from the synaptic protein psd-95

5HDY · Disks large homolog 4: “The third PDZ domain from the synaptic protein psd-95”. X-ray diffraction. MolNFT v1 #120871 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5HDY
Type: protein
Length: 117 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Disks large homolog 4
UniProt: P31016

Structure

x-ray diffraction · 1 distinct chain · 19% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Disks large homolog 4	protein	117	19% helix, 33% strand	P31016

Ligands and binding sites

GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5HDY · The third PDZ domain from the synaptic protein PSD-95 · the same entry in another collection · chain A against A, TM-score 1.00
P31016 · AlphaFold monomer V2.0 prediction for disks large homolog 4 (P31016) · a predicted model of the same protein · chain A against A, TM-score 0.84

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P31016
Elsewhere: RCSB PDB 5HDY · PDBe 5HDY · UniProt P31016

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