MolNFT v1 · #11810 · protein

Crystal structure of the SH3-hook-gk fragment of psd-95

1JXO · Postsynaptic density protein: “Crystal structure of the SH3-hook-gk fragment of psd-95”. X-ray diffraction, 7 pockets (best druggability 0.58). MolNFT v1 #11810 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1JXO
Type: protein
Length: 525 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Postsynaptic density protein
UniProt: P31016
Pockets: 7 · best druggability 0.58

Structure

x-ray diffraction · 2 distinct chains · 37% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Postsynaptic density protein	protein	261	37% helix, 26% strand	P31016
B	Postsynaptic density protein	protein	264	37% helix, 25% strand	P31016

Pockets

7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	234	0.58	0.79	39	empty
2	231	0.58	0.79	37	empty
3	197	0.44	0.73	24	empty
4	103	0.37	0.74	20	empty
5	97	0.36	0.74	18	empty

Interfaces

1 interface between chains.

A–B · 742 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

1JXO · Crystal Structure of the SH3-HOOK-GK Fragment of PSD-95 · the same entry in another collection · chain A against A, TM-score 1.00
P31016 · AlphaFold monomer V2.0 prediction for disks large homolog 4 (P31016) · a predicted model of the same protein · chain B against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P31016
Elsewhere: RCSB PDB 1JXO · PDBe 1JXO · UniProt P31016

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