MolNFT v1 · #114352 · protein
Crystal structure of HPIN1 ww domain (5-21) fused with maltose-binding protein
5BMY · Peptidyl-prolyl cis-trans isomerase nima-interacting 1…: “Crystal structure of HPIN1 ww domain (5-21) fused with maltose-binding protein”. X-ray diffraction, 1 ligand (GLC), 5 pockets (best druggability 0.71). MolNFT v1 #114352 on…
- PDB
- 5BMY
- Type
- protein
- Length
- 387 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptidyl-prolyl cis-trans isomerase nima-interacting 1, maltose-binding periplasmic…
- EC
- 5.2.1.8
- UniProt
- Q13526, P0AEY0
- Ligands
- GLC
- Pockets
- 5 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptidyl-prolyl cis-trans isomerase nima-interacting 1, maltose-binding periplasmic protein (EC 5.2.1.8) | protein | 387 | 43% helix, 20% strand | Q13526, P0AEY0 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 247 | 0.71 | 0.86 | 28 | GLC |
| 2 | 254 | 0.61 | 0.81 | 34 | empty |
| 3 | 175 | 0.47 | 0.76 | 25 | empty |
| 4 | 65 | 0.32 | 0.75 | 15 | empty |
| 5 | 51 | 0.30 | 0.76 | 16 | empty |
Compared structures
- 5BMY · Crystal structure of hPin1 WW domain (5-21) fused with maltose-binding protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q13526
- Every structure of UniProt P0AEY0
- Elsewhere: RCSB PDB 5BMY · PDBe 5BMY · UniProt Q13526 · UniProt P0AEY0
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