MolNFT v1 · #113093 · protein
The crystal structure of arabidopsis thaliana CAR1 in complex with one calcium ion
5A52 · Calcium-dependent lipid-binding domain-containing protein: “The crystal structure of arabidopsis thaliana CAR1 in complex with one calcium ion”. X-ray diffraction, 2 ligands (CA, SO4), 1 pocket (best druggability 0.35). MolNFT v1…
- PDB
- 5A52
- Type
- protein
- Length
- 154 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Calcium-dependent lipid-binding domain-containing protein
- UniProt
- Q9FHP6
- Ligands
- CA, SO4
- Pockets
- 1 · best druggability 0.35
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Calcium-dependent lipid-binding domain-containing protein | protein | 154 | 8% helix, 45% strand | Q9FHP6 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 52 | 0.35 | 0.79 | 13 | empty |
Compared structures
- 5A52 · The crystal structure of Arabidopsis thaliana CAR1 in complex with one calcium ion · the same entry in another collection · chain A against A, TM-score 1.00
- Q9FHP6 · AlphaFold monomer V2.0 prediction for protein C2-domain aba-related 1 (Q9FHP6) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9FHP6
- Elsewhere: RCSB PDB 5A52 · PDBe 5A52 · UniProt Q9FHP6
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