MolNFT v1 · #112940 · protein

Crystal structure of yersinia AFP18-modified rhoa

5A0F · Transforming protein rhoa: “Crystal structure of yersinia AFP18-modified rhoa”. X-ray diffraction, 3 ligands (GDP, NDG, SO4). MolNFT v1 #112940 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5A0F
Type: protein
Length: 178 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transforming protein rhoa
UniProt: P61586
Ligands: GDP, NDG, SO4

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Transforming protein rhoa	protein	178	38% helix, 24% strand	P61586

Ligands and binding sites

GDP · Guanosine-5'-diphosphate · ligand · chains A
NDG · 2-acetamido-2-deoxy-alpha-D-glucopyranose · sugar · chains A
SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 glycan (glycosylation).

Compared structures

5A0F · Crystal structure of Yersinia Afp18-modified RhoA · the same entry in another collection · chain A against A, TM-score 1.00
P61586 · AlphaFold monomer V2.0 prediction for transforming protein rhoa (P61586) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P61586
Elsewhere: RCSB PDB 5A0F · PDBe 5A0F · UniProt P61586

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