MolNFT v1 · #110897 · protein
Rat cypor with 2'-AMP
4YAF · NADPH--cytochrome P450 reductase: “Rat cypor with 2'-AMP”. X-ray diffraction, 4 ligands (FMN, FAD, 2AM), 15 pockets (best druggability 0.81). MolNFT v1 #110897 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4YAF
- Type
- protein
- Length
- 1,214 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NADPH--cytochrome P450 reductase
- EC
- 1.6.2.4
- UniProt
- P00388
- Ligands
- FMN, FAD, 2AM, PO4
- Pockets
- 15 · best druggability 0.81
Structure
x-ray diffraction · 2 distinct chains · 37% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NADPH--cytochrome P450 reductase (EC 1.6.2.4) | protein | 609 | 38% helix, 21% strand | P00388 |
| B | NADPH--cytochrome P450 reductase (EC 1.6.2.4) | protein | 605 | 37% helix, 21% strand | P00388 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · 2 copies · chains A, B
- FAD · Flavin-adenine dinucleotide · ligand · 2 copies · chains A, B
- 2AM · Adenosine-2'-monophosphate · ligand · 2 copies · chains A, B
- PO4 · Phosphate ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
15 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 593 | 0.81 | 0.86 | 73 | empty |
| 2 | 475 | 0.76 | 0.84 | 60 | empty |
| 3 | 414 | 0.74 | 0.84 | 55 | FMN |
| 4 | 325 | 0.67 | 0.82 | 28 | 2AM |
| 5 | 358 | 0.65 | 0.80 | 31 | 2AM |
Interfaces
1 interface between chains.
- A–B · 738 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00388
- Elsewhere: RCSB PDB 4YAF · PDBe 4YAF · UniProt P00388
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