MolNFT v1 · #110610 · protein
Complex of human galectin-1 and (6OSO3)GALBETA1-3GLCNAC
4Y1Y: “Complex of human galectin-1 and (6OSO3)GALBETA1-3GLCNAC”. X-ray diffraction, 2 ligands (6S2, GAL), 2 pockets (best druggability 0.42). MolNFT v1 #110610 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4Y1Y
- Type
- protein
- Length
- 262 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Galectin-1
- UniProt
- P09382
- Ligands
- 6S2, GAL
- Pockets
- 2 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 63% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Galectin-1 | protein | 131 | 0% helix, 63% strand | P09382 |
Ligands and binding sites
- 6S2 · methyl 2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucopyranoside · ligand · 2 copies · chains A, B
- GAL · beta-D-galactopyranose · sugar · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 73 | 0.42 | 0.80 | 15 | empty |
| 2 | 70 | 0.38 | 0.78 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 545 Ų buried · 14 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 modified (oxidation).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P09382
- Elsewhere: RCSB PDB 4Y1Y · PDBe 4Y1Y · UniProt P09382
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