MolNFT v1 · #11011 · protein
CYPOR-W677X
1JA0 · NADPH-cytochrome P450 reductase: “CYPOR-W677X”. X-ray diffraction, 3 ligands (FAD, NAP, FMN), 11 pockets (best druggability 0.83). MolNFT v1 #11011 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1JA0
- Type
- protein
- Length
- 1,039 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NADPH-cytochrome P450 reductase
- EC
- 1.6.2.4
- UniProt
- P00388
- Ligands
- FAD, NAP, FMN
- Pockets
- 11 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 34% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NADPH-cytochrome P450 reductase (EC 1.6.2.4) | protein | 607 | 35% helix, 21% strand | P00388 |
| B | NADPH-cytochrome P450 reductase (EC 1.6.2.4) | protein | 432 | 33% helix, 21% strand | P00388 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · 2 copies · chains A, B
- NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · 2 copies · chains A, B
- FMN · Flavin mononucleotide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
11 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 864 | 0.83 | 0.86 | 92 | empty |
| 2 | 320 | 0.72 | 0.85 | 47 | FMN |
| 3 | 531 | 0.68 | 0.78 | 54 | NAP |
| 4 | 325 | 0.61 | 0.78 | 34 | NAP |
| 5 | 229 | 0.59 | 0.80 | 30 | empty |
Interfaces
1 interface between chains.
- A–B · 694 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00388
- Elsewhere: RCSB PDB 1JA0 · PDBe 1JA0 · UniProt P00388
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