MolNFT v1 · #10975 · protein
Binary complex of the papg receptor-binding domain bound to GBO4 receptor
1J8R · Pyelonephritic adhesin: “Binary complex of the papg receptor-binding domain bound to GBO4 receptor”. X-ray diffraction, 4 ligands (BGC, GAL, GLA). MolNFT v1 #10975 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1J8R
- Type
- protein
- Length
- 196 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pyelonephritic adhesin
- UniProt
- Q47450
- Ligands
- BGC, GAL, GLA, NGA
Structure
x-ray diffraction · 1 distinct chain · 2% helix, 57% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pyelonephritic adhesin | protein | 196 | 2% helix, 57% strand | Q47450 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · chains A
- GAL · beta-D-galactopyranose · sugar · chains A
- GLA · alpha-D-galactopyranose · sugar · chains A
- NGA · 2-acetamido-2-deoxy-beta-D-galactopyranose · sugar · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 3 modified, 1 disulfide (engineered, disulfide).
Compared structures
- 1J8R · Binary complex of the papg receptor-binding domain bound to GBO4 receptor · the same entry in another collection · chain A against A, TM-score 1.00
- Q47450 · AlphaFold monomer V2.0 prediction for fimbrial adhesin papgii (Q47450) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q47450
- Elsewhere: RCSB PDB 1J8R · PDBe 1J8R · UniProt Q47450
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