MolNFT v1 · #10810 · protein
Crystal structure of RAP74 C-terminal domain complexed with FCP1 C- terminal peptide
1J2X · Transcription initiation factor iif, alpha subunit: “Crystal structure of RAP74 C-terminal domain complexed with FCP1 C- terminal peptide”. X-ray diffraction, 2 ligands (ZN, SO4). MolNFT v1 #10810 on GenesisL1: 3D structure, binding…
- PDB
- 1J2X
- Type
- protein
- Length
- 88 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transcription initiation factor iif, alpha subunit; RNA polymerase II ctd phosphatase
- UniProt
- P35269, Q9Y5B0
- Ligands
- ZN, SO4
Structure
x-ray diffraction · 2 distinct chains · 52% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transcription initiation factor iif, alpha subunit | protein | 70 | 49% helix, 16% strand | P35269 |
| B | RNA polymerase II ctd phosphatase | protein | 18 | 67% helix, 0% strand | Q9Y5B0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 682 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 1J2X · Crystal structure of RAP74 C-terminal domain complexed with FCP1 C-terminal peptide · the same entry in another collection · chain A against A, TM-score 1.00
- P35269 · AlphaFold monomer V2.0 prediction for general transcription factor iif subunit 1 (P35269) · a predicted model of the same protein · chain A against A, TM-score 0.88
- Q9Y5B0 · AlphaFold monomer V2.0 prediction for RNA polymerase II subunit a C-terminal domain… · a predicted model of the same protein · chain B against A, TM-score 0.63
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P35269
- Every structure of UniProt Q9Y5B0
- Elsewhere: RCSB PDB 1J2X · PDBe 1J2X · UniProt P35269 · UniProt Q9Y5B0
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