MolNFT v1 · #107179 · protein
Structure of a lectin from the seeds of vatairea macrocarpa complexed with galnac
4U2A · Seed lectin: “Structure of a lectin from the seeds of vatairea macrocarpa complexed with galnac”. X-ray diffraction, 4 ligands (A2G, CA, MN). MolNFT v1 #107179 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4U2A
- Type
- protein
- Length
- 229 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Seed lectin
- UniProt
- P81371
- Ligands
- A2G, CA, MN, SO4
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Seed lectin | protein | 229 | 4% helix, 47% strand | P81371 |
Ligands and binding sites
- A2G · 2-acetamido-2-deoxy-alpha-D-galactopyranose · sugar · chains A
- CA · Calcium ion · metal · chains A
- MN · Manganese (II) ion · metal · chains A
- SO4 · Sulfate ion · ion · 3 copies · chains A
- GOL · Glycerol · additive · 2 copies · chains A
- CIT · Citric acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 4U2A · Structure of a lectin from the seeds of Vatairea macrocarpa complexed with GalNAc · the same entry in another collection · chain A against A, TM-score 1.00
- P81371 · AlphaFold monomer V2.0 prediction for seed lectin (P81371) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P81371
- Elsewhere: RCSB PDB 4U2A · PDBe 4U2A · UniProt P81371
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