MolNFT v1 · #106400 · protein
Crystal structure of ribose transporter solute binding protein RHE_PF00037 from rhizobium etli cfn 42, target efi-511357, in complex with D-ribose
4RY0 · Probable ribose ABC transporter, substrate-binding protein: “Crystal structure of ribose transporter solute binding protein RHE_PF00037 from rhizobium etli cfn 42, target…”. X-ray diffraction, 3 ligands (RIP, CA, CL). MolNFT v1…
- PDB
- 4RY0
- Type
- protein
- Length
- 287 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable ribose ABC transporter, substrate-binding protein
- UniProt
- Q2JZQ5
- Ligands
- RIP, CA, CL
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable ribose ABC transporter, substrate-binding protein | protein | 287 | 44% helix, 22% strand | Q2JZQ5 |
Ligands and binding sites
- RIP · beta-D-ribopyranose · ligand · chains A
- CA · Calcium ion · metal · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 4RY0 · Crystal structure of ribose transporter solute binding protein RHE_PF00037 from Rhizobium… · the same entry in another collection · chain A against A, TM-score 1.00
- Q2JZQ5 · AlphaFold monomer V2.0 prediction for D-apiose import binding protein (Q2JZQ5) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2JZQ5
- Elsewhere: RCSB PDB 4RY0 · PDBe 4RY0 · UniProt Q2JZQ5
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