MolNFT v1 · #103931 · protein

Phl P 4 I153V variant, a glucose oxidase

4PVJ · Pollen allergen phl P 4.0202: “Phl P 4 I153V variant, a glucose oxidase”. X-ray diffraction, 2 ligands (FAD, NA), 2 pockets (best druggability 0.83). MolNFT v1 #103931 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4PVJ
Type: protein
Length: 490 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pollen allergen phl P 4.0202
UniProt: B2ZWE9
Ligands: FAD, NA
Pockets: 2 · best druggability 0.83

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pollen allergen phl P 4.0202	protein	490	36% helix, 21% strand	B2ZWE9

Ligands and binding sites

FAD · Flavin-adenine dinucleotide · ligand · chains A
NA · Sodium ion · metal · 2 copies · chains A
MLI · Malonate ion · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	590	0.83	0.88	79	FAD
2	50	0.37	0.81	20	empty

Modifications

Observed in the structure: 2 cofactor, 2 disulfide (flavinylation, disulfide).

Compared structures

4PVJ · Phl p 4 I153V variant, a glucose oxidase · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B2ZWE9
Elsewhere: RCSB PDB 4PVJ · PDBe 4PVJ · UniProt B2ZWE9

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