MolNFT v1 · #103368 · protein

The molecular and crystal structures of monoclinic porcine pepsin refined at 1.8 ångströms resolution

4PEP: “The molecular and crystal structures of monoclinic porcine pepsin refined at 1.8 ångströms resolution”. X-ray diffraction, 2 pockets (best druggability 0.63). MolNFT v1 #103368 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 4PEP
Type: protein
Length: 326 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pepsin
EC: 3.4.23.1
UniProt: P00791
Pockets: 2 · best druggability 0.63

Structure

x-ray diffraction · 1 distinct chain · 15% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pepsin (EC 3.4.23.1)	protein	326	15% helix, 46% strand	P00791

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	281	0.63	0.80	40	empty
2	84	0.34	0.75	17	empty

Modifications

Observed in the structure: 3 disulfide, 1 modified (disulfide, phosphorylation).

Compared structures

4PEP · The molecular and crystal structures of monoclinic porcine pepsin refined at 1.8… · the same entry in another collection · chain A against A, TM-score 1.00
P00791 · AlphaFold monomer V2.0 prediction for pepsin a (P00791) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00791
Elsewhere: RCSB PDB 4PEP · PDBe 4PEP · UniProt P00791

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