MolNFT v1 · #102309 · protein
C. elegans CLP1 bound to ADP and MG2+ (RNA released state)
4OHX · Protein clpf-1: “C. elegans CLP1 bound to ADP and MG2+ (RNA released state)”. X-ray diffraction, 2 ligands (ADP, MG), 4 pockets (best druggability 0.81). MolNFT v1 #102309 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 4OHX
- Type
- protein
- Length
- 399 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein clpf-1
- UniProt
- P52874
- Ligands
- ADP, MG
- Pockets
- 4 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein clpf-1 | protein | 399 | 26% helix, 33% strand | P52874 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · chains A
- MG · Magnesium ion · metal · chains A
- 2PE · Nonaethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1149 | 0.81 | 0.82 | 91 | ADP, MG |
| 2 | 225 | 0.53 | 0.77 | 32 | empty |
| 3 | 72 | 0.40 | 0.79 | 14 | empty |
| 4 | 61 | 0.38 | 0.79 | 15 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P52874
- Elsewhere: RCSB PDB 4OHX · PDBe 4OHX · UniProt P52874
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