MolNFT v1 · #100058 · protein

Crystal structure of leubat (DELTA13 mutant) in complex with (R)- fluoxetine

4MM8 · Transporter: “Crystal structure of leubat (DELTA13 mutant) in complex with (R)- fluoxetine”. X-ray diffraction, 2 ligands (RFX, NA), 5 pockets (best druggability 0.78). MolNFT v1 #100058 on GenesisL1: 3D structure, binding sites and…

PDB: 4MM8
Type: protein
Length: 498 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transporter
UniProt: O67854
Ligands: RFX, NA
Pockets: 5 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 77% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Transporter	protein	498	77% helix, 1% strand	O67854

Ligands and binding sites

RFX · (3R)-N-methyl-3-phenyl-3-[4-(trifluoromethyl)phenoxy]propan-1-amine · ligand · chains A
NA · Sodium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	738	0.78	0.82	69	RFX
2	82	0.54	0.85	17	empty
3	82	0.46	0.80	13	empty
4	67	0.35	0.76	13	empty
5	76	0.32	0.73	10	empty

Compared structures

4MM8 · Crystal structure of LeuBAT (delta13 mutant) in complex with (R)-fluoxetine · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O67854
Elsewhere: RCSB PDB 4MM8 · PDBe 4MM8 · UniProt O67854

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