AlphaFold monomer V2.0 prediction for GTP-binding protein YPT1 (P01123)

Structure

1 distinct chain · 39% helix, 22% strand (DSSP).

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Compared structures

• 1YZN · Gppnhp-bound YPT1P GTPase · an experimental structure of the same protein · chain A against A, TM-score 0.80
• 1YZN · GppNHp-Bound Ypt1p GTPase · an experimental structure of the same protein · chain A against A, TM-score 0.80
• 2BCG · Structure of doubly prenylated Ypt1:GDI complex · an experimental structure of the same protein · chain A against Y, TM-score 0.79
• 2BCG · Structure of doubly prenylated YPT1:GDI complex · an experimental structure of the same protein · chain A against Y, TM-score 0.79
• 1UKV · Structure of RabGDP-dissociation inhibitor in complex with prenylated YPT1 GTPase · an experimental structure of the same protein · chain A against Y, TM-score 0.79
• 1UKV · Structure of rabgdp-dissociation inhibitor in complex with prenylated YPT1 GTPase · an experimental structure of the same protein · chain A against Y, TM-score 0.79
• 3CUE · Crystal structure of a TRAPP subassembly activating the Rab Ypt1p · an experimental structure of the same protein · chain A against F, TM-score 0.72
• 3CUE · Crystal structure of a trapp subassembly activating the rab YPT1P · an experimental structure of the same protein · chain A against F, TM-score 0.72
• 7KMT · Structure of the yeast trappiii-YPT1(RAB1) complex · an experimental structure of the same protein · chain A against A, TM-score 0.69

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P01123
• Elsewhere: UniProt P01123 · AlphaFold DB P01123