MolNFT v1 · #487014 · protein
AlphaFold monomer V2.0 prediction for ubiquitin carboxyl-terminal hydrolase 20 (Q9Y2K6)
Q9Y2K6: “AlphaFold monomer V2.0 prediction for ubiquitin carboxyl-terminal hydrolase 20 (Q9Y2K6)”. 10 pockets (best druggability 0.75). MolNFT v1 #487014 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q9Y2K6
- Type
- protein
- Length
- 914 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x8C954013C4258592c1e35032a3C46015B3fad9A2
- Molecule
- Ubiquitin carboxyl-terminal hydrolase 20
- UniProt
- Q9Y2K6
- Pockets
- 10 · best druggability 0.75
Structure
1 distinct chain · 28% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ubiquitin carboxyl-terminal hydrolase 20 | protein | 914 | 28% helix, 18% strand | Q9Y2K6 |
Pockets
10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1076 | 0.75 | 0.78 | 88 | empty |
| 2 | 228 | 0.59 | 0.80 | 31 | empty |
| 3 | 236 | 0.54 | 0.77 | 40 | empty |
| 4 | 369 | 0.53 | 0.73 | 42 | empty |
| 5 | 175 | 0.50 | 0.77 | 24 | empty |
Compared structures
- 6KCZ · Solution structure of the znf-ubp domain of USP20/VDU2 · an experimental structure of the same protein · chain A against A, TM-score 0.10
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y2K6
- Elsewhere: UniProt Q9Y2K6 · AlphaFold DB Q9Y2K6
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