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AlphaFold monomer V2.0 prediction for ubiquitin carboxyl-terminal hydrolase 20 (Q9Y2K6)

Analyse AlphaFold monomer V2.0 prediction for ubiquitin carboxyl-terminal hydrolase 20… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q9Y2K6
Type: protein
Length: 914 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x8C954013C4258592c1e35032a3C46015B3fad9A2
Molecule: Ubiquitin carboxyl-terminal hydrolase 20
UniProt: Q9Y2K6
Pockets: 10 · best druggability 0.75

Structure

1 distinct chain · 28% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ubiquitin carboxyl-terminal hydrolase 20	protein	914	28% helix, 18% strand	Q9Y2K6

Pockets

10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1076	0.75	0.78	88	empty
2	228	0.59	0.80	31	empty
3	236	0.54	0.77	40	empty
4	369	0.53	0.73	42	empty
5	175	0.50	0.77	24	empty

Compared structures

6KCZ · Solution structure of the znf-ubp domain of USP20/VDU2 · an experimental structure of the same protein · chain A against A, TM-score 0.10
6KCZ · Solution structure of the ZnF-UBP domain of USP20/VDU2 · an experimental structure of the same protein · chain A against A, TM-score 0.10

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9Y2K6
Elsewhere: UniProt Q9Y2K6 · AlphaFold DB Q9Y2K6

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