MolNFT v1 · #481958 · protein
AlphaFold monomer V2.0 prediction for tRNA-5-METHYLURIDINE(54) 2-sulfurtransferase (O58038)
O58038: “AlphaFold monomer V2.0 prediction for tRNA-5-METHYLURIDINE(54) 2-sulfurtransferase (O58038)”. 3 pockets (best druggability 0.79). MolNFT v1 #481958 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- O58038
- Type
- protein
- Length
- 310 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7F88b78Bd43250971E3B1b401f8c2B17562d5F7C
- Molecule
- TRNA-5-METHYLURIDINE(54) 2-sulfurtransferase
- UniProt
- O58038
- Pockets
- 3 · best druggability 0.79
Structure
1 distinct chain · 45% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TRNA-5-METHYLURIDINE(54) 2-sulfurtransferase | protein | 310 | 45% helix, 13% strand | O58038 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1122 | 0.79 | 0.80 | 83 | empty |
| 2 | 141 | 0.50 | 0.79 | 27 | empty |
| 3 | 61 | 0.26 | 0.72 | 16 | empty |
Compared structures
- 5MKO · [2FE-2S] cluster containing ttua in complex with AMP. · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 5MKO · [2Fe-2S] cluster containing TtuA in complex with AMP. · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 5MKQ · Ttua enzyme containing a [4FE-4S] · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 5MKQ · TtuA enzyme containing a [4Fe-4S] · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 5MKP · Non redox thiolation in transfer RNAs occuring via sulfur activation by a [4Fe-4S] cluster · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 5MKP · Non redox thiolation in transfer rnas occuring via sulfur activation by a [4FE-4S] cluster · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 3VRH · Crystal structure of ph0300 · an experimental structure of the same protein · chain A against A, TM-score 0.92
- 3VRH · Crystal structure of PH0300 · an experimental structure of the same protein · chain A against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O58038
- Elsewhere: UniProt O58038 · AlphaFold DB O58038
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.