MolNFT v1 · #127032 · protein
[2FE-2S] cluster containing ttua in complex with AMP.
5MKO: “[2FE-2S] cluster containing ttua in complex with AMP.”. X-ray diffraction, 3 ligands (AMP, FES, ZN). MolNFT v1 #127032 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5MKO
- Type
- protein
- Length
- 610 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O58038
- Ligands
- AMP, FES, ZN
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 308 | — | O58038 |
| B | — | protein | 302 | — | O58038 |
Ligands and binding sites
- AMP · Adenosine monophosphate · ligand · 2 copies · chains A, B
- FES · Fe2/s2 (inorganic) cluster · ligand · 2 copies · chains A, B
- ZN · Zinc ion · metal · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5MKO · [2Fe-2S] cluster containing TtuA in complex with AMP. · the same entry in another collection · chain A against A, TM-score 1.00
- O58038 · AlphaFold monomer V2.0 prediction for tRNA-5-METHYLURIDINE(54) 2-sulfurtransferase… · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O58038
- Elsewhere: RCSB PDB 5MKO · PDBe 5MKO · UniProt O58038
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