MolNFT v1 · #127033 · protein
Non redox thiolation in transfer rnas occuring via sulfur activation by a [4FE-4S] cluster
5MKP · PH0300: “Non redox thiolation in transfer rnas occuring via sulfur activation by a [4FE-4S] cluster”. X-ray diffraction, 2 ligands (Q46, ZN), 2 pockets (best druggability 0.79). MolNFT v1 #127033 on GenesisL1: 3D structure, binding…
- PDB
- 5MKP
- Type
- protein
- Length
- 307 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PH0300
- UniProt
- O58038
- Ligands
- Q46, ZN
- Pockets
- 2 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | PH0300 | protein | 307 | 44% helix, 13% strand | O58038 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1128 | 0.79 | 0.80 | 78 | Q46 |
| 2 | 139 | 0.48 | 0.78 | 21 | empty |
Compared structures
- 5MKP · Non redox thiolation in transfer RNAs occuring via sulfur activation by a [4Fe-4S] cluster · the same entry in another collection · chain A against A, TM-score 1.00
- O58038 · AlphaFold monomer V2.0 prediction for tRNA-5-METHYLURIDINE(54) 2-sulfurtransferase… · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O58038
- Elsewhere: RCSB PDB 5MKP · PDBe 5MKP · UniProt O58038
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