MolNFT v1 · #406625 · protein
AlphaFold monomer V2.0 prediction for 30S ribosomal protein S4 (P62664)
P62664: “AlphaFold monomer V2.0 prediction for 30S ribosomal protein S4 (P62664)”. 2 pockets (best druggability 0.55). MolNFT v1 #406625 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P62664
- Type
- protein
- Length
- 209 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa3452b8cEc5f7d4aA7eA35d2483a9795B3ae3C17
- Molecule
- 30S ribosomal protein S4
- UniProt
- P62664
- Pockets
- 2 · best druggability 0.55
Structure
1 distinct chain · 44% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 30S ribosomal protein S4 | protein | 209 | 44% helix, 9% strand | P62664 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 158 | 0.55 | 0.81 | 28 | empty |
| 2 | 139 | 0.48 | 0.78 | 21 | empty |
Compared structures
- 6BOK · E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome · an experimental structure of the same protein · chain A against LA, TM-score 0.97
- 4KVB · Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17 · an experimental structure of the same protein · chain A against D, TM-score 0.97
- 4KVB · Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17 · an experimental structure of the same protein · chain A against D, TM-score 0.97
- 4V67 · Crystal structure of a translation termination complex formed with release factor RF2. · an experimental structure of the same protein · chain A against AD, TM-score 0.97
- 4V83 · Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to… · an experimental structure of the same protein · chain A against AD, TM-score 0.97
- 4V9Q · Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome. · an experimental structure of the same protein · chain A against BD, TM-score 0.97
- 4V9N · Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. · an experimental structure of the same protein · chain A against AD, TM-score 0.96
- 4V7P · Recognition of the amber stop codon by release factor RF1. · an experimental structure of the same protein · chain A against AD, TM-score 0.96
- 4V63 · Structural basis for translation termination on the 70S ribosome. · an experimental structure of the same protein · chain A against AD, TM-score 0.96
- 4V84 · Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S… · an experimental structure of the same protein · chain A against AD, TM-score 0.96
- 4V9K · 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP… · an experimental structure of the same protein · chain A against AD, TM-score 0.95
- 4V9M · 70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC… · an experimental structure of the same protein · chain A against AD, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P62664
- Elsewhere: UniProt P62664 · AlphaFold DB P62664
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