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AlphaFold monomer V2.0 prediction for 30S ribosomal protein S4 (P62664)

Analyse AlphaFold monomer V2.0 prediction for 30S ribosomal protein S4 (P62664) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession
P62664
Type
protein
Length
209 residues
Chains
1
Collection
MolNFT v1 / AlphaFold
Contract
0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner
0xa3452b8cEc5f7d4aA7eA35d2483a9795B3ae3C17
Molecule
30S ribosomal protein S4
UniProt
P62664
Pockets
2 · best druggability 0.55

Structure

1 distinct chain · 44% helix, 9% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A30S ribosomal protein S4protein20944% helix, 9% strandP62664

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
11580.550.8128empty
21390.480.7821empty

Compared structures

  • 6CFJ · Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM… · an experimental structure of the same protein · chain A against 1d, TM-score 0.97
  • 6CFL · Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and… · an experimental structure of the same protein · chain A against 2d, TM-score 0.97
  • 5V8I · Thermus thermophilus 70S ribosome lacking ribosomal protein uS17 · an experimental structure of the same protein · chain A against 2d, TM-score 0.97
  • 4ZER · Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus… · an experimental structure of the same protein · chain A against 2d, TM-score 0.97
  • 6CFK · Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM… · an experimental structure of the same protein · chain A against 1d, TM-score 0.97
  • 6BOK · E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome · an experimental structure of the same protein · chain A against LA, TM-score 0.97
  • 5J4D · E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop… · an experimental structure of the same protein · chain A against MA, TM-score 0.97

Analyse

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