MolNFT v1 · #332128 · protein
AlphaFold monomer V2.0 prediction for DNA repair and recombination protein rada (Q55075)
Q55075: “AlphaFold monomer V2.0 prediction for DNA repair and recombination protein rada (Q55075)”. 3 pockets (best druggability 0.43). MolNFT v1 #332128 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q55075
- Type
- protein
- Length
- 324 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xAA02A2FF70d56DfE0213584307973a4Afb1e909E
- Molecule
- DNA repair and recombination protein rada
- UniProt
- Q55075
- Pockets
- 3 · best druggability 0.43
Structure
1 distinct chain · 41% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA repair and recombination protein rada | protein | 324 | 41% helix, 21% strand | Q55075 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 190 | 0.43 | 0.73 | 25 | empty |
| 2 | 70 | 0.32 | 0.75 | 18 | empty |
| 3 | 72 | 0.31 | 0.74 | 14 | empty |
Compared structures
- 2ZUC · Crystal structure of left-handed RadA filament · an experimental structure of the same protein · chain A against B, TM-score 0.69
- 2ZUC · Crystal structure of left-handed rada filament · an experimental structure of the same protein · chain A against B, TM-score 0.69
- 2ZUD · Crystal structure of left-handed rada filament · an experimental structure of the same protein · chain A against B, TM-score 0.68
- 2ZUD · Crystal Structure of Left-handed RadA Filament · an experimental structure of the same protein · chain A against B, TM-score 0.68
- 2DFL · Crystal structure of left-handed rada filament · an experimental structure of the same protein · chain A against A, TM-score 0.68
- 2DFL · Crystal structure of left-handed RadA filament · an experimental structure of the same protein · chain A against A, TM-score 0.68
- 2BKE · Conformational flexibility revealed by the crystal structure of a crenarchaeal rada · an experimental structure of the same protein · chain A against A, TM-score 0.68
- 2BKE · Conformational Flexibility Revealed by the Crystal Structure of a Crenarchaeal RadA · an experimental structure of the same protein · chain A against A, TM-score 0.68
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q55075
- Elsewhere: UniProt Q55075 · AlphaFold DB Q55075
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